Decryptor's release notes ========================= [Decryptor 1.0] - peptide-spectrum-match (PSM) evaluation - basis: peptides which pass X!Tandem's maximal E-Value <= 0.1 - if there are multiple candidate peptide interpretations for same spectrum, the spectrum is discarded from results - while this preserves specificity, it decreases sensitivity considerably and will be soon important point of development - tags are attached to each PSM, and their agreement with X!Tandem interpretation of spectrum is evaluated - PepNovo is used with CID_ID_TRYP model - precursor and fragment mass tolerance units - PepNovo does not support ppm's, the values are converted to Da at 5 kDa - protein inference - simple greedy set covering approach to the problem - no grouping to indiscernible protein groups