Acknowledgement
===============

This work was supported by ELIXIR CZ research infrastructure project (MEYS Grant No: LM2015047) including access to computing and storage facilities.

The software will not be able to exist without (at least) these excellent software libraries/systems.

[OpenMS]

Marc Sturm, Andreas Bertsch, Clemens Gröpl, Andreas Hildebrandt, Rene Hussong, Eva Lange, Nico Pfeifer, Ole Schulz-Trieglaff, Alexandra Zerck, Knut Reinert, and Oliver Kohlbacher, 2008.
“OpenMS – an Open-Source Software Framework for Mass Spectrometry”
BMC Bioinformatics 9: 163. doi:10.1186/1471-2105-9-163.

[X!Tandem]

TANDEM: matching proteins with mass spectra, Robertson Craig and Ronald C. Beavis, Bioinformatics, 2004, 20, 1466-7.

[PepNovo+]

PepNovo: De Novo Peptide Sequencing via Probabilistic Network Modeling
Frank, A. and Pevzner, P.
Analytical Chemistry 77:964-973, 2005.

[SciPy]

Author: Eric Jones, Travis Oliphant, Pearu Peterson and others.
Title: SciPy: Open Source Scientific Tools for Python
Year: 2001 -
URL: http://www.scipy.org/

[pandas]

Python Data Analysis Library.
URL: http://pandas.pydata.org/

[pyteomics]

Goloborodko, A.A.; Levitsky, L.I.; Ivanov, M.V.; and Gorshkov, M.V. (2013) “Pyteomics - a Python Framework for Exploratory Data Analysis and Rapid Software Prototyping in Proteomics”, Journal of The American Society for Mass Spectrometry, 24(2), 301–304. DOI: 10.1007/s13361-012-0516-6

[ProteoWizard]

ProteoWizard: Open Source Software for Rapid Proteomics Tools Development 
Darren Kessner; Matt Chambers; Robert Burke; David Agus; Parag Mallick
Bioinformatics 2008; doi: 10.1093/bioinformatics/btn323